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Home / Brian Caffo

Brian Caffo

brian_w150.jpg

Brian Caffo
Professor

Department of Biostatistics
Bloomberg School of Public Health
Johns Hopkins University
615 N Wolfe Street
Baltimore, MD, 21214


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Professional Experience: 

Official appointments

  • 2007- Associate professor, Department of Biostatistics, Johns Hopkins University
  • 2001-2007 Assistant professor, Department of Biostatistics, Johns Hopkins University
  • 1996-1999 Research assistant for professor Alan Agresti, Department of Statistics, University of Florida
  • 1996, 1999 Intern / database programmer, the Pediatric Oncology Group Statistical Office

Extended visits to other departments

  • May - August 2006 Department of Biostatistics, Emory University
  • December - May 2006 Center for Imaging Science, Johns Hopkins University
  • June 2004 Carnegie Mellon, Department of Statistics

Professional Activities: 

Membership: ASA, ENAR, IMS, OHBM

Review of research proposals:

  • NIH/NCI 2008; ad hoc study section member for Quick Trials on Imaging and Image-guided Intervention
  • NIH/BMRD 2009; ad hoc study section member for the Biostatistical Methods and Research Design Study Section
  • NIH/NIMH 2009 and 2010; ad hoc study section member for Interventions Committee for Adult Disorders
  • NIH 2011; ad hoc study section member for Special Emphasis Panel on Epidemiology

Professional society positions:

  • Publications Officer for the Biometrics Section of the American Statistical Association 2005, 2006
  • Founding member (2010) and secretary (2010-) for the Statistics in Imaging ASA section.
  • Organizer: Biometrics invited session: Statistical Methodology for the Analysis of Sleep Studies, JSM 2007
  • Organizer: Biometrics invited session: Statistical Methods for Complex Functional Biological Signals, ENAR 2011
  • Organizer: Contributed session: Novel developments in statistical blind source separation and independent components analysis, ENAR 2012
  • Session chair: JSM (2003, 2006, 2007), ENAR (2002, 2007)

Teaching: 
  • Biostat 140.751 and 140.752
Education & Training: 
  •  2006 NIH K25 training grant “A mentored training program in imaging science” emphasizing research and coursework in medical imaging
  • 2001 PhD in statistics from the University of Florida Department of Statistics under Professor James Booth; thesis title “Candidate sampling schemes and some important applications”
  • 1998 MS in statistics from the University of Florida Department of Statistics
  • 1995 BS in mathematics and statistics from the University of Florida’s Departments of Mathematics and Statistics.

Honors & Awards: 
  • 1998 William S. Mendenhall Award
  • 1999 Anderson Scholar/Faculty nominee for the University of Florida CLAS
  • 2001 University of Florida CLAS Dissertation Fellowship
  • 2001 University of Floridas Statistics Faculty Award
  • 2002 Johns Hopkins Faculty Innovation Award
  • 2006 Johns Hopkins Bloomberg School of Public Health AMTRA award
  • 2008 Johns Hopkins Bloomberg School of Public Health Golden Apple teaching award
  • 2011 Leader and organizer of the “Significant Predictors”, the declared winning entry of the 2011 ADHD200 prediction competition
  • 2011 Presidential Early Career Award for Scientists and Engineers (PECASE, 2010, awarded in 2011); “The highest honor bestowed by the United States government on science and engineering professionals in the early stages of their independent research careers”

Software: 
  • code A Case Study in Pharmacologic Imaging Using Principal Curves in Single Photon Emission Computed Tomography (with Crainiceanu et al.)
  • code A Bayesian Hierarchical Framework for Spatial Modeling of fMRI Data (with Bowman et al.)
  • code notes Flexible Random Intercept Models for Binary Outcomes Using Mixtures of Normals (with An and Rohde)
  • code User-friendly Tutorial on Link-probit-normal Models (with Griswold)
  • code at CRAN notes Exact Hypothesis Tests for Log-linear Models with exactLoglinTest
  • code Ascent-based MCEM (with Jank and Jones)
Selected Publications: 
[1] [2] [3] [4] [5] [6] [7]

References

  1. Lauzon C, Crainiceanu C, Caffo B, Landman B.  2012.  Assessment of bias in experimentally measured diffusion tensor imaging parameters using SIMEX. Accepted in Magnetic Resonance in Medicine.
  2. Yang X, Lauzon C, Crainiceanu C, Caffo B, Resnick S, Landman B.  2012.  Biological parametric mapping accounting for random regressors with regression calibration and model II regression. Accepted in Neuroimage.
  3. Louissaint N, Nimmagadda S, Bakshi R, Du Y, Macura K, King K, Wahl R, Goldsmith J, Caffo B, Cao Y et al..  2012.  Distribution of cell-free and cell-associated HIV surrogates in the female genital tract following simulated vaginal intercourse. Appeared online in the Journal of Infectious Diseases.
  4. Thom K, Howard T, Sembajwe S, Harris A, Strassle P, Caffo B, Caroll K, Johnson J.  2012.  Comparison of swab versus sponge methodology for the identification of acinetobacter baumannii from the hospital environment. Accepted in the Journal of Clinical Microbiology.
  5. James B, Caffo B, Stewart W, Yousem D, Davatzikos C, Schwartz B.  2012.  Genetic risk factors for longitudinal changes in structural MRI in former organolead workers. Accepted in the Journal of Aging Research.
  6. Goldsmith J, Crainiceanu C, Caffo B, Reich D.  2012.  Longitudinal penalized functional regression for cognitive outcomes on neuronal tract measurements. Journal of the Royal Statistical Society Series C. :453–469.
  7. Swihart B, Caffo B, Crainiceanu C, Punjabi NM.  2012.  Mixed effect Poisson log-linear models for clinical and epidemiological sleep hypnogram data. Stat Med. 31:855–870.
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